Bibliography for Fundamental Topics in Immunology B. BIOL4185 BETA

@article{Arbore_West_Spolski_Robertson_Klos_Rheinheimer_Dutow_Woodruff_Yu_ONeill_et al._2016, title={T helper 1 immunity requires complement-driven NLRP3 inflammasome activity in CD4+ T cells}, volume={352}, DOI={10.1126/science.aad1210}, number={6292}, journal={Science}, author={Arbore, G. and West, E. E. and Spolski, R. and Robertson, A. A. B. and Klos, A. and Rheinheimer, C. and Dutow, P. and Woodruff, T. M. and Yu, Z. X. and ONeill, L. A. and Coll, R. C. and Sher, A. and Leonard, W. J. and Kohl, J. and Monk, P. and Cooper, M. A. and Arno, M. and Afzali, B. and Lachmann, H. J. and Cope, A. P. and Mayer-Barber, K. D. and Kemper, C.}, year={2016}, month=june, pages={aad1210–aad1210} }

@article{Banchereau_Pascual_O’Garra_2012, title={From IL-2 to IL-37: the expanding spectrum of anti-inflammatory cytokines}, volume={13}, DOI={10.1038/ni.2406}, number={10}, journal={Nature Immunology}, author={Banchereau, Jacques and Pascual, Virginia and O’Garra, Anne}, year={2012}, month=sept, pages={925–931} }

@article{Basu_Hatton_Weaver_2013, title={The Th17 family: flexibility follows function}, volume={252}, DOI={10.1111/imr.12035}, number={1}, journal={Immunological Reviews}, author={Basu, Rajatava and Hatton, Robin D. and Weaver, Casey T.}, year={2013}, month=mar, pages={89–103} }

@inbook{Baumgarth_2013, address={New York, NY}, title={Innate-Like B Cells and Their Rules of Engagement}, volume={785}, url={http://link.springer.com/10.1007/978-1-4614-6217-0_7}, DOI={10.1007/978-1-4614-6217-0_7}, booktitle={Crossroads Between Innate and Adaptive Immunity IV}, publisher={Springer New York}, author={Baumgarth, Nicole}, editor={Katsikis, Peter D. and Schoenberger, Stephen P. and Pulendran, Bali}, year={2013}, pages={57–66} }

@article{Bilate_Lafaille_2012, title={Induced CD4                              Foxp3                              Regulatory T Cells in Immune Tolerance}, volume={30}, DOI={10.1146/annurev-immunol-020711-075043}, number={1}, journal={Annual Review of Immunology}, author={Bilate, Angelina M. and Lafaille, Juan J.}, year={2012}, month=apr, pages={733–758} }

@article{Braun_Worbs_Moschovakis_Halle_Hoffmann_Bölter_Münk_Förster_2011, title={Afferent lymph–derived T cells and DCs use different chemokine receptor CCR7–dependent routes for entry into the lymph node and intranodal migration}, volume={12}, DOI={10.1038/ni.2085}, number={9}, journal={Nature Immunology}, author={Braun, Asolina and Worbs, Tim and Moschovakis, G Leandros and Halle, Stephan and Hoffmann, Katharina and Bölter, Jasmin and Münk, Anika and Förster, Reinhold}, year={2011}, month=aug, pages={879–887} }

@article{Bravo-Blas_Wessel_Milling_2016, title={Microbiota and arthritis}, DOI={10.1097/BOR.0000000000000261}, journal={Current Opinion in Rheumatology}, author={Bravo-Blas, Alberto and Wessel, Hannah and Milling, Simon}, year={2016}, month=jan }

@article{Cerutti_Puga_Magri_2013, title={The B cell helper side of neutrophils}, volume={94}, DOI={10.1189/jlb.1112596}, number={4}, journal={Journal of Leukocyte Biology}, author={Cerutti, A. and Puga, I. and Magri, G.}, year={2013}, month=oct, pages={677–682} }

@article{Cerutti_Cols_Puga_2013, title={Marginal zone B cells: virtues of innate-like antibody-producing lymphocytes}, volume={13}, DOI={10.1038/nri3383}, number={2}, journal={Nature Reviews Immunology}, author={Cerutti, Andrea and Cols, Montserrat and Puga, Irene}, year={2013}, month=jan, pages={118–132} }

@article{Chu_Khosravi_Kusumawardhani_Kwon_Vasconcelos_Cunha_Mayer_Shen_Wu_Kambal_et al._2016, title={Gene-microbiota interactions contribute to the pathogenesis of inflammatory bowel disease}, volume={352}, DOI={10.1126/science.aad9948}, number={6289}, journal={Science}, author={Chu, H. and Khosravi, A. and Kusumawardhani, I. P. and Kwon, A. H. K. and Vasconcelos, A. C. and Cunha, L. D. and Mayer, A. E. and Shen, Y. and Wu, W.-L. and Kambal, A. and Targan, S. R. and Xavier, R. J. and Ernst, P. B. and Green, D. R. and McGovern, D. P. B. and Virgin, H. W. and Mazmanian, S. K.}, year={2016}, month=may, pages={1116–1120} }

@article{Costello_Lauber_Hamady_Fierer_Gordon_Knight_2009, title={Bacterial Community Variation in Human Body Habitats Across Space and Time}, volume={326}, DOI={10.1126/science.1177486}, number={5960}, journal={Science}, author={Costello, E. K. and Lauber, C. L. and Hamady, M. and Fierer, N. and Gordon, J. I. and Knight, R.}, year={2009}, month=dec, pages={1694–1697} }

@article{Curotto de Lafaille_Lafaille_2009, title={Natural and Adaptive Foxp3+ Regulatory T Cells: More of the Same or a Division of Labor?}, volume={30}, DOI={10.1016/j.immuni.2009.05.002}, number={5}, journal={Immunity}, author={Curotto de Lafaille, Maria A. and Lafaille, Juan J.}, year={2009}, month=may, pages={626–635} }

@article{Cyster_2010, title={B cell follicles and antigen encounters of the third kind}, volume={11}, DOI={10.1038/ni.1946}, number={11}, journal={Nature Immunology}, author={Cyster, Jason G}, year={2010}, month=nov, pages={989–996} }

@article{Duan_Thomas_2016, title={Balancing Immune Protection and Immune Pathology by CD8+ T-Cell Responses to Influenza Infection}, volume={7}, DOI={10.3389/fimmu.2016.00025}, journal={Frontiers in Immunology}, author={Duan, Susu and Thomas, Paul G.}, year={2016}, month=feb }

@article{Durbin_Kotenko_Durbin_2013, title={Interferon induction and function at the mucosal surface}, volume={255}, DOI={10.1111/imr.12101}, number={1}, journal={Immunological Reviews}, author={Durbin, Russell K. and Kotenko, Sergei V. and Durbin, Joan E.}, year={2013}, month=sept, pages={25–39} }

@article{Förster_Davalos-Misslitz_Rot_2008, title={CCR7 and its ligands: balancing immunity and tolerance}, volume={8}, DOI={10.1038/nri2297}, number={5}, journal={Nature Reviews Immunology}, author={Förster, Reinhold and Davalos-Misslitz, Ana Clara and Rot, Antal}, year={2008}, month=may, pages={362–371} }

@article{Garraud_Borhis_Badr_Degrelle_Pozzetto_Cognasse_Richard_2012, title={Revisiting the B-cell compartment in mouse and humans: more than one B-cell subset exists in the marginal zone and beyond}, volume={13}, DOI={10.1186/1471-2172-13-63}, number={1}, journal={BMC Immunology}, author={Garraud, Olivier and Borhis, Gwenoline and Badr, Gamal and Degrelle, Séverine and Pozzetto, Bruno and Cognasse, Fabrice and Richard, Yolande}, year={2012} }

@article{Giltiay_Chappell_Clark_2012, title={B-cell selection and the development of autoantibodies}, volume={14}, DOI={10.1186/ar3918}, number={Suppl 4}, journal={Arthritis Research & Therapy}, author={Giltiay, Natalia V and Chappell, Craig P and Clark, Edward A}, year={2012} }

@article{Jameson_Masopust_2009, title={Diversity in T Cell Memory: An Embarrassment of Riches}, volume={31}, DOI={10.1016/j.immuni.2009.11.007}, number={6}, journal={Immunity}, author={Jameson, Stephen C. and Masopust, David}, year={2009}, month=dec, pages={859–871} }

@article{Josefowicz_Lu_Rudensky_2012, title={Regulatory T Cells: Mechanisms of Differentiation and Function}, volume={30}, DOI={10.1146/annurev.immunol.25.022106.141623}, number={1}, journal={Annual Review of Immunology}, author={Josefowicz, Steven Z. and Lu, Li-Fan and Rudensky, Alexander Y.}, year={2012}, month=apr, pages={531–564} }

@article{Li_Rudensky_2016, title={T cell receptor signalling in the control of regulatory T cell differentiation and function}, volume={16}, DOI={10.1038/nri.2016.26}, number={4}, journal={Nature Reviews Immunology}, author={Li, Ming O. and Rudensky, Alexander Y.}, year={2016}, month=mar, pages={220–233} }

@article{Liston_Gray_2014, title={Homeostatic control of regulatory T cell diversity}, volume={14}, DOI={10.1038/nri3605}, number={3}, journal={Nature Reviews Immunology}, author={Liston, Adrian and Gray, Daniel H. D.}, year={2014}, month=jan, pages={154–165} }

@article{Mowat_2003, title={Anatomical basis of tolerance and immunity to intestinal antigens}, volume={3}, DOI={10.1038/nri1057}, number={4}, journal={Nature Reviews Immunology}, author={Mowat, Allan McI.}, year={2003}, month=apr, pages={331–341} }

@article{Mueller_Gebhardt_Carbone_Heath_2013, title={Memory T Cell Subsets, Migration Patterns, and Tissue Residence}, volume={31}, DOI={10.1146/annurev-immunol-032712-095954}, number={1}, journal={Annual Review of Immunology}, author={Mueller, Scott N. and Gebhardt, Thomas and Carbone, Francis R. and Heath, William R.}, year={2013}, month=mar, pages={137–161} }

@article{Mueller_Mackay_2015, title={Tissue-resident memory T cells: local specialists in immune defence}, volume={16}, DOI={10.1038/nri.2015.3}, number={2}, journal={Nature Reviews Immunology}, author={Mueller, Scott N. and Mackay, Laura K.}, year={2015}, month=dec, pages={79–89} }

@article{Murphy_Stockinger_2010, title={Effector T cell plasticity: flexibility in the face of changing circumstances}, volume={11}, DOI={10.1038/ni.1899}, number={8}, journal={Nature Immunology}, author={Murphy, Kenneth M and Stockinger, Brigitta}, year={2010}, month=aug, pages={674–680} }

@article{Nibbs_Graham_2013, title={Immune regulation by atypical chemokine receptors}, volume={13}, DOI={10.1038/nri3544}, number={11}, journal={Nature Reviews Immunology}, author={Nibbs, Robert J. B. and Graham, Gerard J.}, year={2013}, month=oct, pages={815–829} }

@article{Nierkens_Tel_Janssen_Adema_2013, title={Antigen cross-presentation by dendritic cell subsets: one general or all sergeants?}, volume={34}, DOI={10.1016/j.it.2013.02.007}, number={8}, journal={Trends in Immunology}, author={Nierkens, Stefan and Tel, Jurjen and Janssen, Edith and Adema, Gosse J.}, year={2013}, month=aug, pages={361–370} }

@article{O’Shea_Holland_Staudt_2013, title={JAKs and STATs in Immunity, Immunodeficiency, and Cancer}, volume={368}, DOI={10.1056/NEJMra1202117}, number={2}, journal={New England Journal of Medicine}, author={O’Shea, John J. and Holland, Steven M. and Staudt, Louis M.}, year={2013}, month=jan, pages={161–170} }

@article{Pillai_Cariappa_2009, title={The follicular versus marginal zone B lymphocyte cell fate decision}, volume={9}, DOI={10.1038/nri2656}, number={11}, journal={Nature Reviews Immunology}, author={Pillai, Shiv and Cariappa, Annaiah}, year={2009}, month=nov, pages={767–777} }

@article{Poon_Lucas_Rossi_Ravichandran_2014, title={Apoptotic cell clearance: basic biology and therapeutic potential}, volume={14}, DOI={10.1038/nri3607}, number={3}, journal={Nature Reviews Immunology}, author={Poon, Ivan K. H. and Lucas, Christopher D. and Rossi, Adriano G. and Ravichandran, Kodi S.}, year={2014}, month=jan, pages={166–180} }

@article{Reiner_Sallusto_Lanzavecchia_2007, title={Division of Labor with a Workforce of One: Challenges in Specifying Effector and Memory T Cell Fate}, volume={317}, DOI={10.1126/science.1143775}, number={5838}, journal={Science}, author={Reiner, S. L. and Sallusto, F. and Lanzavecchia, A.}, year={2007}, month=aug, pages={622–625} }

@article{Rosser_Blair_Mauri_2014, title={Cellular targets of regulatory B cell-mediated suppression}, volume={62}, DOI={10.1016/j.molimm.2014.01.014}, number={2}, journal={Molecular Immunology}, author={Rosser, Elizabeth C. and Blair, Paul A. and Mauri, Claudia}, year={2014}, month=dec, pages={296–304} }

@article{Sakaguchi_Miyara_Costantino_Hafler_2010, title={FOXP3+ regulatory T cells in the human immune system}, volume={10}, DOI={10.1038/nri2785}, number={7}, journal={Nature Reviews Immunology}, author={Sakaguchi, Shimon and Miyara, Makoto and Costantino, Cristina M. and Hafler, David A.}, year={2010}, month=july, pages={490–500} }

@article{Sakaguchi_Vignali_Rudensky_Niec_Waldmann_2013, title={The plasticity and stability of regulatory T cells}, volume={13}, DOI={10.1038/nri3464}, number={6}, journal={Nature Reviews Immunology}, author={Sakaguchi, Shimon and Vignali, Dario A. A. and Rudensky, Alexander Y. and Niec, Rachel E. and Waldmann, Herman}, year={2013}, month=may, pages={461–467} }

@article{Schmidt_Nino-Castro_Schultze_2012, title={Regulatory dendritic cells: there is more than just immune activation}, volume={3}, DOI={10.3389/fimmu.2012.00274}, journal={Frontiers in Immunology}, author={Schmidt, Susanne V. and Nino-Castro, Andrea C. and Schultze, Joachim L.}, year={2012} }

@article{Schumann_Lämmermann_Bruckner_Legler_Polleux_Spatz_Schuler_Förster_Lutz_Sorokin_et al._2010, title={Immobilized Chemokine Fields and Soluble Chemokine Gradients Cooperatively Shape Migration Patterns of Dendritic Cells}, volume={32}, DOI={10.1016/j.immuni.2010.04.017}, number={5}, journal={Immunity}, author={Schumann, Kathrin and Lämmermann, Tim and Bruckner, Markus and Legler, Daniel F. and Polleux, Julien and Spatz, Joachim P. and Schuler, Gerold and Förster, Reinhold and Lutz, Manfred B. and Sorokin, Lydia and Sixt, Michael}, year={2010}, month=may, pages={703–713} }

@article{Shaikh_Haas_Beck_Teague_2015, title={The effects of diet-induced obesity on B cell function}, volume={179}, DOI={10.1111/cei.12444}, number={1}, journal={Clinical & Experimental Immunology}, author={Shaikh, S. R. and Haas, K. M. and Beck, M. A. and Teague, H.}, year={2015}, month=jan, pages={90–99} }

@article{Shevach_2009, title={Mechanisms of Foxp3+ T Regulatory Cell-Mediated Suppression}, volume={30}, DOI={10.1016/j.immuni.2009.04.010}, number={5}, journal={Immunity}, author={Shevach, Ethan M.}, year={2009}, month=may, pages={636–645} }

@article{Shih_Sciumè_Poholek_Vahedi_Hirahara_Villarino_Bonelli_Bosselut_Kanno_Muljo_et al._2014, title={Transcriptional and epigenetic networks of helper T and innate lymphoid cells}, volume={261}, DOI={10.1111/imr.12208}, number={1}, journal={Immunological Reviews}, author={Shih, Han-Yu and Sciumè, Giuseppe and Poholek, Amanda C. and Vahedi, Golnaz and Hirahara, Kiyoshi and Villarino, Alejandro V. and Bonelli, Michael and Bosselut, Remy and Kanno, Yuka and Muljo, Stefan A. and O’Shea, John J.}, year={2014}, month=sept, pages={23–49} }

@book{SpringerLink (Online service)_2014, address={Cham}, title={Transcriptional control of lineage differentiation in immune cells}, volume={volume 381}, url={http://ezproxy.lib.gla.ac.uk/login?url=http://dx.doi.org/10.1007/978-3-319-07395-8}, publisher={Springer}, author={SpringerLink (Online service)}, editor={Ellmeier, Wilfried and Taniuchi, Ichiro}, year={2014} }

@article{Tanoue_Atarashi_Honda_2016, title={Development and maintenance of intestinal regulatory T cells}, volume={16}, DOI={10.1038/nri.2016.36}, number={5}, journal={Nature Reviews Immunology}, author={Tanoue, Takeshi and Atarashi, Koji and Honda, Kenya}, year={2016}, month=apr, pages={295–309} }

@article{Ulvmar_Werth_Braun_Kelay_Hub_Eller_Chan_Lucas_Novitzky-Basso_Nakamura_et al._2014, title={The atypical chemokine receptor CCRL1 shapes functional CCL21 gradients in lymph nodes}, volume={15}, DOI={10.1038/ni.2889}, number={7}, journal={Nature Immunology}, author={Ulvmar, Maria H and Werth, Kathrin and Braun, Asolina and Kelay, Poonam and Hub, Elin and Eller, Kathrin and Chan, Li and Lucas, Beth and Novitzky-Basso, Igor and Nakamura, Kyoko and Rülicke, Thomas and Nibbs, Robert J B and Worbs, Tim and Förster, Reinhold and Rot, Antal}, year={2014}, month=may, pages={623–630} }

@article{Vazquez_Catalan-Dibene_Zlotnik_2015, title={B cells responses and cytokine production are regulated by their immune microenvironment}, volume={74}, DOI={10.1016/j.cyto.2015.02.007}, number={2}, journal={Cytokine}, author={Vazquez, Monica I. and Catalan-Dibene, Jovani and Zlotnik, Albert}, year={2015}, month=aug, pages={318–326} }

@article{Vinuesa_Linterman_Goodnow_Randall_2010, title={T cells and follicular dendritic cells in germinal center B-cell formation and selection}, volume={237}, DOI={10.1111/j.1600-065X.2010.00937.x}, number={1}, journal={Immunological Reviews}, author={Vinuesa, Carola G. and Linterman, Michelle A. and Goodnow, Chris C. and Randall, Katrina L.}, year={2010}, month=aug, pages={72–89} }

@article{Vinuesa_Sanz_Cook_2009, title={Dysregulation of germinal centres in autoimmune disease}, volume={9}, DOI={10.1038/nri2637}, number={12}, journal={Nature Reviews Immunology}, author={Vinuesa, Carola G. and Sanz, Iñaki and Cook, Matthew C.}, year={2009}, month=dec, pages={845–857} }

@article{Weber_Hauschild_Schwarz_Moussion_de Vries_Legler_Luther_Bollenbach_Sixt_2013, title={Interstitial Dendritic Cell Guidance by Haptotactic Chemokine Gradients}, volume={339}, DOI={10.1126/science.1228456}, number={6117}, journal={Science}, author={Weber, M. and Hauschild, R. and Schwarz, J. and Moussion, C. and de Vries, I. and Legler, D. F. and Luther, S. A. and Bollenbach, T. and Sixt, M.}, year={2013}, month=jan, pages={328–332} }

@article{Weiner_da Cunha_Quintana_Wu_2011, title={Oral tolerance}, volume={241}, DOI={10.1111/j.1600-065X.2011.01017.x}, number={1}, journal={Immunological Reviews}, author={Weiner, Howard L. and da Cunha, Andre Pires and Quintana, Francisco and Wu, Henry}, year={2011}, month=may, pages={241–259} }

@article{Wherry_2011, title={T cell exhaustion}, volume={131}, DOI={10.1038/ni.2035}, number={6}, journal={Nature Immunology}, author={Wherry, E John}, year={2011}, month=june, pages={492–499} }

@article{Williams_Bevan_2007, title={Effector and Memory CTL Differentiation}, volume={25}, DOI={10.1146/annurev.immunol.25.022106.141548}, number={1}, journal={Annual Review of Immunology}, author={Williams, Matthew A. and Bevan, Michael J.}, year={2007}, month=apr, pages={171–192} }

@article{Xing_Hogquist_2012, title={T-Cell Tolerance: Central and Peripheral}, volume={4}, DOI={10.1101/cshperspect.a006957}, number={6}, journal={Cold Spring Harbor Perspectives in Biology}, author={Xing, Y. and Hogquist, K. A.}, year={2012}, month=june, pages={a006957–a006957} }

@article{Yamane_Paul_2012a, title={Memory CD4+ T Cells: fate determination, positive feedback and plasticity}, volume={69}, DOI={10.1007/s00018-012-0966-9}, number={10}, journal={Cellular and Molecular Life Sciences}, author={Yamane, Hidehiro and Paul, William E.}, year={2012}, month=may, pages={1577–1583} }

@article{Yamane_Paul_2012b, title={Cytokines of the γc family control CD4+ T cell differentiation and function}, volume={13}, DOI={10.1038/ni.2431}, number={11}, journal={Nature Immunology}, author={Yamane, Hidehiro and Paul, William E}, year={2012}, month=oct, pages={1037–1044} }

@article{Yamane_Paul_2012c, title={Cytokines of the γc family control CD4+ T cell differentiation and function}, volume={13}, DOI={10.1038/ni.2431}, number={11}, journal={Nature Immunology}, author={Yamane, Hidehiro and Paul, William E}, year={2012}, month=oct, pages={1037–1044} }

@article{Yamane_Paul_2013, title={Early signaling events that underlie fate decisions of naive CD4                              T cells toward distinct T-helper cell subsets}, volume={252}, DOI={10.1111/imr.12032}, number={1}, journal={Immunological Reviews}, author={Yamane, Hidehiro and Paul, William E.}, year={2013}, month=mar, pages={12–23} }

@article{Yu_Vinuesa_2010, title={The elusive identity of T follicular helper cells}, volume={31}, DOI={10.1016/j.it.2010.07.001}, number={10}, journal={Trends in Immunology}, author={Yu, Di and Vinuesa, Carola G.}, year={2010}, month=oct, pages={377–383} }

@article{Zhou_Chong_Littman_2009, title={Plasticity of CD4+ T Cell Lineage Differentiation}, volume={30}, DOI={10.1016/j.immuni.2009.05.001}, number={5}, journal={Immunity}, author={Zhou, Liang and Chong, Mark M.W. and Littman, Dan R.}, year={2009}, month=may, pages={646–655} }

@article{Zhu_Yamane_Paul_2010, title={Differentiation of Effector CD4 T Cell Populations}, volume={28}, DOI={10.1146/annurev-immunol-030409-101212}, number={1}, journal={Annual Review of Immunology}, author={Zhu, Jinfang and Yamane, Hidehiro and Paul, William E.}, year={2010}, month=mar, pages={445–489} }

@article{ORIGINS OF CD4  EFFECTOR AND CENTRAL MEMORY T CELLS, volume={12}, url={http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4212218/}, number={6}, journal={Nature immunology} }