Abe, Namiko, Iris Dror, Lin Yang, Matthew Slattery, Tianyin Zhou, Harmen J. Bussemaker, Remo Rohs, and Richard S. Mann. 2015. ‘Deconvolving the Recognition of DNA Shape from Sequence’. Cell 161 (2): 307–18. https://doi.org/10.1016/j.cell.2015.02.008.
Adli, Mazhar. 2018. ‘The CRISPR Tool Kit for Genome Editing and Beyond’. Nature Communications 9 (1). https://doi.org/10.1038/s41467-018-04252-2.
Alberts, Bruce. 2015. Molecular Biology of the Cell. Sixth edition. New York, NY: Garland Science, Taylor and Francis Group.
Bogdanove, Adam J, Andrew Bohm, Jeffrey C Miller, Richard D Morgan, and Barry L Stoddard. 2018. ‘Engineering Altered Protein–DNA Recognition Specificity’. Nucleic Acids Research 46 (10): 4845–71. https://doi.org/10.1093/nar/gky289.
Calladine, C. R. 2004. 1. Understanding DNA: The Molecule & How It Works. 3rd ed. San Diego, Calif: Academic.
Cejka, Petr. 2017. ‘Biochemistry: Complex Assistance for DNA Invasion’. Nature, October. https://doi.org/10.1038/nature24149.
Chandrasekaran, Arun Richard, Nate Anderson, Megan Kizer, Ken Halvorsen, and Xing Wang. 2016. ‘5. Beyond the Fold: Emerging Biological Applications of DNA Origami’. ChemBioChem 17 (12): 1081–89. https://doi.org/10.1002/cbic.201600038.
Chen, Stefanie Hartman, Nei-Li Chan, and Tao-shih Hsieh. 2013. ‘New Mechanistic and Functional Insights into DNA Topoisomerases’. Annual Review of Biochemistry 82 (1): 139–70. https://doi.org/10.1146/annurev-biochem-061809-100002.
Clapier, Cedric R., Janet Iwasa, Bradley R. Cairns, and Craig L. Peterson. 2017. ‘16. Mechanisms of Action and Regulation of ATP-Dependent Chromatin-Remodelling Complexes’. Nature Reviews Molecular Cell Biology 18 (7): 407–22. https://doi.org/10.1038/nrm.2017.26.
Deindl, Sebastian, William L. Hwang, Swetansu K. Hota, Timothy R. Blosser, Punit Prasad, Blaine Bartholomew, and Xiaowei Zhuang. 2013. ‘ISWI Remodelers Slide Nucleosomes with Coordinated Multi-Base-Pair Entry Steps and Single-Base-Pair Exit Steps’. Cell 152 (3): 442–52. https://doi.org/10.1016/j.cell.2012.12.040.
Doublié, Sylvie, and Karl E. Zahn. 2014. ‘Structural Insights into Eukaryotic DNA Replication’. Frontiers in Microbiology 5 (August). https://doi.org/10.3389/fmicb.2014.00444.
Gilbert, Nick, and James Allan. 2014. ‘Supercoiling in DNA and Chromatin’. Current Opinion in Genetics & Development 25 (April): 15–21. https://doi.org/10.1016/j.gde.2013.10.013.
Goodarzi, Aaron A., and Penelope A. Jeggo. 2013. ‘25. The Repair and Signaling Responses to DNA Double-Strand Breaks’. Adv Genet 82: 1–45. https://doi.org/10.1016/B978-0-12-407676-1.00001-9.
Graham, James E., Kenneth J. Marians, and Stephen C. Kowalczykowski. 2017. ‘Independent and Stochastic Action of DNA Polymerases in the Replisome’. Cell 169 (7): 1201-1213.e17. https://doi.org/10.1016/j.cell.2017.05.041.
Hänsel-Hertsch, Robert, Marco Di Antonio, and Shankar Balasubramanian. 2017. ‘4. DNA G-Quadruplexes in the Human Genome: Detection, Functions and Therapeutic Potential’. Nature Reviews Molecular Cell Biology 18 (5): 279–84. https://doi.org/10.1038/nrm.2017.3.
Hille, Frank, Hagen Richter, Shi Pey Wong, Majda Bratovič, Sarah Ressel, and Emmanuelle Charpentier. 2018. ‘The Biology of CRISPR-Cas: Backward and Forward’. Cell 172 (6): 1239–59. https://doi.org/10.1016/j.cell.2017.11.032.
Jia, Ruobing, Peiwei Chai, He Zhang, and Xianqun Fan. 2017. ‘Novel Insights into Chromosomal Conformations in Cancer’. Molecular Cancer 16 (1). https://doi.org/10.1186/s12943-017-0741-5.
Kaniecki, Kyle, Luisina De Tullio, and Eric C. Greene. 2017. ‘A Change of View: Homologous Recombination at Single-Molecule Resolution’. Nature Reviews Genetics 19 (4): 191–207. https://doi.org/10.1038/nrg.2017.92.
Krebs, Jocelyn E., Elliott S. Goldstein, and Stephen T. Kilpatrick. 2018. Lewin’s Genes XII. 12th ed. Burlington, Mass: Jones & Bartlett Learning.
Ledford, Heidi. 2017. ‘Five Big Mysteries about CRISPR’s Origins’. Nature 541 (7637): 280–82. https://doi.org/10.1038/541280a.
Lelli, Katherine M., Matthew Slattery, and Richard S. Mann. 2012. ‘14. Disentangling the Many Layers of Eukaryotic Transcriptional Regulation’. Annual Review of Genetics 46 (1): 43–68. https://doi.org/10.1146/annurev-genet-110711-155437.
Lesbats, Paul, Alan N. Engelman, and Peter Cherepanov. 2016. ‘23. Retroviral DNA Integration’. Chemical Reviews 116 (20): 12730–57. https://doi.org/10.1021/acs.chemrev.6b00125.
Liu, Dekang, Guido Keijzers, and Lene Juel Rasmussen. 2017. ‘24. DNA Mismatch Repair and Its Many Roles in Eukaryotic Cells’. Mutation Research/Reviews in Mutation Research 773 (July): 174–87. https://doi.org/10.1016/j.mrrev.2017.07.001.
Lodish, Harvey F. 2013. Molecular Cell Biology. 7th ed., International ed. New York: W.H. Freeman and Company.
Ludmil B Alexandrov. 2018a. ‘Understanding the Origins of Human Cancer’. Science. http://science.sciencemag.org/content/350/6265/1175.1.long.
Ludmil B Alexandrov et al. 2016. ‘Mutational Signatures Associated with Tobacco Smoking in Human Cancer’. Mutational Signatures Associated with Tobacco Smoking in Human Cancer. http://ezproxy.lib.gla.ac.uk/login?url=http://science.sciencemag.org/content/354/6312/618.long.
M Ryan Corces et al. 2018b. ‘The Chromatin Accessibility Landscape of Primary Human Cancers’. Science. http://science.sciencemag.org/content/362/6413/eaav1898.long.
Marteijn, Jurgen A., Hannes Lans, Wim Vermeulen, and Jan H. J. Hoeijmakers. 2014. ‘26. Understanding Nucleotide Excision Repair and Its Roles in Cancer and Ageing’. Nature Reviews Molecular Cell Biology 15 (7): 465–81. https://doi.org/10.1038/nrm3822.
Modrich, Paul. 2016. ‘Mechanisms in and Human Mismatch Repair (Nobel Lecture)’. Angewandte Chemie International Edition 55 (30): 8490–8501. https://doi.org/10.1002/anie.201601412.
Montaño, Sherwin P, and Phoebe A Rice. 2011. ‘Moving DNA around: DNA Transposition and Retroviral Integration’. Current Opinion in Structural Biology 21 (3): 370–78. https://doi.org/10.1016/j.sbi.2011.03.004.
Nelson, Hillary C. M., John T. Finch, Bonaventura F. Luisi, and Aaron Klug. 1987. ‘3. The Structure of an Oligo(dA)-Oligo(dT) Tract and Its Biological Implications’. Nature 330 (6145): 221–26. http://ezproxy.lib.gla.ac.uk/login?url=https://www.nature.com/nature/journal/v330/n6145/abs/330221a0.html.
Nogales, Eva, Robert K. Louder, and Yuan He. 2017. ‘12. Structural Insights into the Eukaryotic Transcription Initiation Machinery’. Annual Review of Biophysics 46 (1): 59–83. https://doi.org/10.1146/annurev-biophys-070816-033751.
Nudler, Evgeny. 2009. ‘13. RNA Polymerase Active Center: The Molecular Engine of Transcription’. Annual Review of Biochemistry 78 (1): 335–61. https://doi.org/10.1146/annurev.biochem.76.052705.164655.
Pennisi, E. 2003. ‘DNA’s Cast of Thousands’. Science 300 (5617): 282–85. https://doi.org/10.1126/science.300.5617.282.
Pomerantz, Richard T., and Mike O’Donnell. 2007. ‘18. Replisome Mechanics: Insights into a Twin DNA Polymerase Machine’. Trends in Microbiology 15 (4): 156–64. https://doi.org/10.1016/j.tim.2007.02.007.
Renkawitz, Jörg, Claudio A. Lademann, and Stefan Jentsch. 2014. ‘19. Mechanisms and Principles of Homology Search during Recombination’. Nature Reviews Molecular Cell Biology 15 (6): 369–83. https://doi.org/10.1038/nrm3805.
Rice, Phoebe A, Shu-wei Yang, Kiyoshi Mizuuchi, and Howard A Nash. 1996. ‘7. Crystal Structure of an IHF-DNA Complex: A Protein-Induced DNA U-Turn’. Cell 87 (7): 1295–1306. https://doi.org/10.1016/S0092-8674(00)81824-3.
Rohs, Remo, Xiangshu Jin, Sean M. West, Rohit Joshi, Barry Honig, and Richard S. Mann. 2010. ‘6. Origins of Specificity in Protein-DNA Recognition’. Annual Review of Biochemistry 79 (1): 233–69. https://doi.org/10.1146/annurev-biochem-060408-091030.
Rowley, M. Jordan, and Victor G. Corces. 2018. ‘Organizational Principles of 3D Genome Architecture’. Nature Reviews Genetics 19 (12): 789–800. https://doi.org/10.1038/s41576-018-0060-8.
Schoeffler, Allyn J., and James M. Berger. 2008. ‘11. DNA Topoisomerases: Harnessing and Constraining Energy to Govern Chromosome Topology’. Quarterly Reviews of Biophysics 41 (01). https://doi.org/10.1017/S003358350800468X.
Swinger, Kerren K, and Phoebe A Rice. 2004. ‘IHF and HU: Flexible Architects of Bent DNA’. Current Opinion in Structural Biology 14 (1): 28–35. https://doi.org/10.1016/j.sbi.2003.12.003.
Terakawa, Tsuyoshi, Shveta Bisht, Jorine M. Eeftens, Cees Dekker, Christian H. Haering, and Eric C. Greene. 2017. ‘The Condensin Complex Is a Mechanochemical Motor That Translocates along DNA’. Science 358 (6363): 672–76. https://doi.org/10.1126/science.aan6516.
Tessarz, Peter, and Tony Kouzarides. 2014. ‘Histone Core Modifications Regulating Nucleosome Structure and Dynamics’. Nature Reviews Molecular Cell Biology 15 (11): 703–8. https://doi.org/10.1038/nrm3890.
Uhlmann, Frank. 2016. ‘17. SMC Complexes: From DNA to Chromosomes’. Nature Reviews Molecular Cell Biology 17 (7): 399–412. https://doi.org/10.1038/nrm.2016.30.
Watson, J.D., and F.H.C. Crick. 1953. ‘2. A Structure for Deoxyribose Nucleic Acid’. https://ezproxy.lib.gla.ac.uk/login?url=https://www.nature.com/articles/171737a0.pdf.
West, Stephen C. 2009. ‘The Search for a Human Holliday Junction Resolvase’. Biochemical Society Transactions 37 (3): 519–26. https://doi.org/10.1042/BST0370519.
Wigley, Dale B. 2012. ‘21. Bacterial DNA Repair: Recent Insights into the Mechanism of RecBCD, AddAB and AdnAB’. Nature Reviews Microbiology 11 (1): 9–13. https://doi.org/10.1038/nrmicro2917.
Wright, Addison V., Jun-Jie Liu, Gavin J. Knott, Kevin W. Doxzen, Eva Nogales, and Jennifer A. Doudna. 2017. ‘Structures of the CRISPR Genome Integration Complex’. Science 357 (6356): 1113–18. https://doi.org/10.1126/science.aao0679.
Zhao, Weixing, Justin B. Steinfeld, Fengshan Liang, Xiaoyong Chen, David G. Maranon, Chu Jian Ma, Youngho Kwon, et al. 2017. ‘BRCA1–BARD1 Promotes RAD51-Mediated Homologous DNA Pairing’. Nature 550 (7676): 360–65. https://doi.org/10.1038/nature24060.
